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Inside your Stripe account, you create a business, you get API keys for that business. Lets call it “Business A”. Where ever you use those API keys, the transactions using those API keys will go under that business (in this case “Business A”).
I think you are trying to create separate businesses for the different WordPress installs. So you need to create Another business inside your Stripe account. Lets call it “Business B”. You will get a different set of API keys for this business. You can now plug the Stripe API keys from this business in your other WP install. Then the transactions from these API keys will go under “Business B”.